SELECT 
  cscart_multi_decproduct_prices.product_id, 
  MIN(
    IF(
      cscart_multi_decproduct_prices.percentage_discount = 0, 
      cscart_multi_decproduct_prices.price, 
      cscart_multi_decproduct_prices.price - (
        cscart_multi_decproduct_prices.price * cscart_multi_decproduct_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_multi_decproduct_prices 
WHERE 
  cscart_multi_decproduct_prices.product_id IN (
    89, 90, 91, 92, 93, 94, 95, 96, 97, 100, 
    101, 102, 103, 104, 105, 106, 107, 108, 
    109, 110, 111, 112, 113, 114
  ) 
  AND cscart_multi_decproduct_prices.lower_limit = 1 
  AND cscart_multi_decproduct_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_multi_decproduct_prices.product_id

Query time 0.00089

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "56.00"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "table": {
        "table_name": "cscart_multi_decproduct_prices",
        "access_type": "ref",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "lower_limit",
        "used_key_parts": [
          "lower_limit"
        ],
        "key_length": "3",
        "ref": [
          "const"
        ],
        "rows_examined_per_scan": 235,
        "rows_produced_per_join": 4,
        "filtered": "1.89",
        "index_condition": "(`vishalecarter_multi_dec`.`cscart_multi_decproduct_prices`.`lower_limit` <=> 1)",
        "cost_info": {
          "read_cost": "9.00",
          "eval_cost": "0.89",
          "prefix_cost": "56.00",
          "data_read_per_join": "106"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`vishalecarter_multi_dec`.`cscart_multi_decproduct_prices`.`product_id` in (89,90,91,92,93,94,95,96,97,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114)) and (`vishalecarter_multi_dec`.`cscart_multi_decproduct_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
89 19.99000000
90 19.99000000
91 10700.00000000
92 3225.00000000
93 19.99000000
94 59.99000000
95 19.99000000
96 99.99000000
97 14.99000000
100 22.70000000
101 188.88000000
102 295.00000000
103 23.99000000
104 29.95000000
105 169.99000000
106 179.99000000
107 465.00000000
108 12.99000000
109 140.00000000
110 15.99000000
111 6.99000000
112 8.99000000
113 449.99000000
114 14.99000000